NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1038445

Scaffold Ga0181359_1038445


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1038445 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1853
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007570Metagenome348Y
F010832Metagenome / Metatranscriptome298Y
F013404Metagenome271Y
F029676Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10384452F010832GGAGGMRDIKDVVAWLEEELAHFEMAVEQYNYVSKADEIRYRMAQELLAWTLGYKFDKKYLASPVSRETCNSEQEAR
Ga0181359_10384455F029676GAGGMGHLNKTFYNYTTTQDAWDEYLDLIKDDNTFASQWLDTEDDFSEWCESHDIVLVDTQERVNQLEEAQLE
Ga0181359_10384456F013404GGAGGMTTIIDAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCSNADEDCPLEYRTEHFRSAITDGYDLLKKVGYFKNKKRVHKWDI
Ga0181359_10384458F007570GGAGGMNEDITYIKQYIKTFNDRRLREEYSLYTLLEKPTILENYFKDFIKQEISTRGIGV
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