NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1038634

Scaffold Ga0181359_1038634


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1038634 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1849
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010232Metagenome / Metatranscriptome306Y
F010612Metagenome301Y
F038155Metagenome166Y
F056557Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10386341F038155N/AGKAYKKKPKVQKKTGKTIDGYSPSKLAIRAKKRGM
Ga0181359_10386342F056557GAGGMYLDTGTMIGIIIALAASMLTIGYSIYIIKTQNEIIQRMSDARATRRKMER
Ga0181359_10386343F010232AGGMRTEQELLKIKEAFALSTMDMLDVFDELLATGRLYVNDEPTVNDLAKNQDESNA
Ga0181359_10386344F010612GAGMTSPKIKMSPMLDEDTPQWEHTVWIMAKVRCRTTHINIDTAGDEALDDPSEWYVLEFDKGIKHSQEIVRVK
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