NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1044810

Scaffold Ga0181359_1044810


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1044810 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1711
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y
F009746Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10448101F009679AGGAMALITLAELKAVLGIGDIYADAIVQACADSAENIILSYLTFDDVAIKGVSLTSNVARFFCYDNTFVVGQVLTVSKCGAPFDGSRTVTATGIDEYQVTYFEAAVTNADITKRMVIPNGRAVLTSQAALYDTTPEVREAALAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0181359_10448102F009746AGGLANLATYRADLAATLAAAGRVVYSFPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANIETLIFSVTDLLANNISFLGGWSQPTVQQIGNADMLISQLNVEMVTTN
Ga0181359_10448103F009526AGGAMPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMFLDDSSSAGIISALWDAANTSPDSLLSFSFDVNGDTFAGSLFPVFPTVGGAATDVLTTSLSFVVNDGSVSRT
Ga0181359_10448104F009265AGGMEYNVTTKQGNNYIVSDESAWLWVEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAAGKTMLPSQQSWVVNEFETFEVVEDSPFP
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