NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1057949

Scaffold Ga0181359_1057949


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1057949 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1486
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F078719Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10579491F078719AGGMEIIEIYLLFALTTGITSCYLFLVPAVSLAREMNIQNTFTENTWLSYAIYITITTITAPFSILPIFITSFAERFKTGLERAVLENQI
Ga0181359_10579492F045760GGAGMASSGSKAKQAYAALYKSSTRWATNRKIKLTRILKQQPNNEQIKDALANIKYRRHTPTTKTVWSHSNIRIAKLFKEFTGRASADLFSSNPKVQFAALMYRPDADKLGVIEGRVNFSLGARAHDAKGNFIWK
Ga0181359_10579493F038245AGGAMKIYFGNANEDLFSDGLFVINDKQYYYGVQHGTNPGGLDEVVIFDGCKRKVPVHIEAIPELIAALKEVQRVNEAVKEANRLTERAESKTKGYVYSSWNDDFEVDFDTE
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