NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1159422

Scaffold Ga0181359_1159422


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1159422 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001807Metagenome / Metatranscriptome631Y
F020342Metagenome / Metatranscriptome224Y
F076006Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_11594221F020342N/AMSAVTDNLNMFDRINLAACAERRASANVLNSKRWNGEYDTARLWMKYRLVKTTTYSYVDD
Ga0181359_11594222F001807GGAMTVLAIEHTSFTDTHVTVTAVVDEMRLLYRATRFEPEEWTAALCQATIELDPEEPIPLDEDGFCAYLDQLDPQWELVERDDLD
Ga0181359_11594223F076006N/AMQFKLPSNLQTELLPYDPTLKVLARQAKAKTTKKAKYPLGNIPHL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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