NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182025_1050147

Scaffold Ga0182025_1050147


Overview

Basic Information
Taxon OID3300019786 Open in IMG/M
Scaffold IDGa0182025_1050147 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019639Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0182025_10501472F019639AGGAGMLTPRIFTCVAIAALSPLAHAQTPPTVYTITQALPAPSTGIMTIYRNGSQAIIEYRRPAQPDGTPASRTLTLYDLKAGVSHSWDPSGTPPSCSAGTFTGDWGDPFAGTAEVTASISKGDLKPAGAETLNGIPTKVYAGTTQGANIKAWLDEKDGLVIKAAYGAPGGPMQNMVDIRSFTKGPPSASVFATLPACVSVHPPPTAAELMAAETGDNGANFVNAIYGPGTKASCSILVRVVAAKTMAPINRHFQAAIDTTYNQDDPNPPHYVFGVGEDGTSTFSGGGLHEITNQVHNGMLRIDHVPAYFMFGINIPTPHEGAATGLIYRQCFA
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