NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182025_1213940

Scaffold Ga0182025_1213940


Overview

Basic Information
Taxon OID3300019786 Open in IMG/M
Scaffold IDGa0182025_1213940 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1936
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025399Metagenome / Metatranscriptome202Y
F078313Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0182025_12139401F078313N/AVATPEEVVIDNDNFSKVVEDAESRRASGSTMVFSLDPGAKNFQVSSPDVSCSFSFSAKTSSLLSDPIALDELPRSELAKLDGPATIDGDSLQVSMHNGTAWELREVVIGLTILRRGTGDTATSYGAARIVPAVADGSAPPGQESFQKKPDITVLLRVKGSAAPSATALFRTQLNFALFPDQEWHWAIVRAKGVPPQPAAETTATQLDQVPASFQCRR
Ga0182025_12139403F025399GGAGGMTSKQILDAFSETLMQDERILSLRERELLMSLLQNAKDAAGNPEIQSAVTAAIARSVGETVAQRAFGLLGSSIVEQIVARGAASSAIEESIPAT
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