NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182028_1529458

Scaffold Ga0182028_1529458


Overview

Basic Information
Taxon OID3300019788 Open in IMG/M
Scaffold IDGa0182028_1529458 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041546Metagenome159N
F050108Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0182028_15294581F041546N/AVPDDDNFNVRTEVNDLAIRYAKLPDGPDKEAAFLKLVECFHGYLIKYTNMVIRGQLPNPTSRVGKDAAEMLKKLLPRGSNPDQTVLSKTCHTLHLAFKTMTTDDIYDAMVMCFLRACRRYDPLYTDKVRQVCEVLDGETFCQQFTADAVSSVVGFDAVGCIRLLVRKQYLVSVVGNQRKVIGYRR
Ga0182028_15294582F050108N/AFPFMPPPAPLPTELHNLKVNRLEPGQLGNTIRRGDKWANVPRGHDLLLTQGLDHKIVGHGRVEKVWTGPFNEVPATVLDRNHSGSQSYSSVLLAMRDAYGADFSEDEIVVFLDYKRIS
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