NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137408_1005249

Scaffold Ga0137408_1005249


Overview

Basic Information
Taxon OID3300019789 Open in IMG/M
Scaffold IDGa0137408_1005249 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001565Metagenome / Metatranscriptome670Y
F001851Metagenome / Metatranscriptome626Y

Sequences

Protein IDFamilyRBSSequence
Ga0137408_10052491F001565AGGAGMSTGICKSPDSRYWRALYKGALSEIGNNKLPERIAEAEKAVVLRARELFQAADDNGEEKEALEDAMYALHALGSNCQMQ
Ga0137408_10052492F001851GGAGMSAIRISWGLLIPLVLLIAMFVILLLYKIRKLRPEVSGYGSQRMCPFCGLITSRLKADCLECGRSLTAVGVTSTIEN
Ga0137408_10052493F000042GAGMNNTKFVVKVNRGSTRATEYVQRVDLTPIQMTPNRKLALVMGRFTAEDAAKSLQNSWCSTELVSVQVLGPRVVAPK
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