NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193705_1000538

Scaffold Ga0193705_1000538


Overview

Basic Information
Taxon OID3300019869 Open in IMG/M
Scaffold IDGa0193705_1000538 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8693
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9203Long. (o)-106.9495Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096857Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0193705_10005387F096857N/AMRRYRLSMKLVVAAAVALALAAPASAAPKLGPLVRAQITRAIDVFVNHAVKRSDTVAAYDVVAPELRPGISRREWAGGDIPVYPFPARGLTHPWNILYVTREEVGLELQLIPRAHSDVGPIIFHIYLRPAHGRWLVDSFMPVATLAPLDAKKTKVRSIRDFAPQAAGGVALGNSGPGQLSSLYLILPVALIGGALLGLACWGVTRALRNRKLQGPGSGSLPPLPRSGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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