NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193744_1003443

Scaffold Ga0193744_1003443


Overview

Basic Information
Taxon OID3300019874 Open in IMG/M
Scaffold IDGa0193744_1003443 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2896
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8927Long. (o)-106.9112Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061612Metagenome / Metatranscriptome131Y
F074512Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0193744_10034432F074512N/AMIVFLHFCALIGTTLIVARGTVFSPLQRALPAFFQCGQCVGMWVGMAAGATSVVPVGHGRILDAAVVGAATSFASMLADAVLLNLLGDPNERA
Ga0193744_10034433F061612AGGAGMPKLIHQETMCGYKRCCPTIKIFDDGSIELSDDDLKTASVGTIKFDPESVVRLLDTLLAHNK

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