NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193722_1004617

Scaffold Ga0193722_1004617


Overview

Basic Information
Taxon OID3300019877 Open in IMG/M
Scaffold IDGa0193722_1004617 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3422
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.987Long. (o)-107.0038Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000168Metagenome / Metatranscriptome1799Y
F073823Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0193722_10046175F000168N/AMPRPTTNSADLATELAQRLPEALTGERIIPRFVDSYVVEHGRHALQAHAAQYRDRLSLLQREALLALTVAILQLACVEPAASKKSKPRQMSRKDAGLFRRRFLTALARQQKWTAGDALDFQSDLHVYEQLVFRTAATRRTRKSFEVANHPFVDRCAFLLDSSFMEKARLAASRTLGDLEDLAAHLVEPSVQQKGAGKTR
Ga0193722_10046176F073823N/ATLEEVLEHALSKESIVPPVVPEPKKRIGPDAPRAIH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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