Scaffold Ga0193723_1000177

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193723_1000177

Scaffold Ga0193723_1000177

Overview

Basic Information
Taxon OID	3300019879 Open in IMG/M
Scaffold ID	Ga0193723_1000177 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	23131
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (64.52%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.987	Long. (^o)	-107.0038	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001175	Metagenome / Metatranscriptome	756	Y
F018903	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193723_100017720	F001175	GGAG	MRAVMCGAVLVVAACGPPNPCSGHQFDRLRRYSLPYAGHWVVARGDTLTFPDAPAMSDRFRLGDITLDTATALLGRECAFRGHIVFRAPRAETLAVSWFGQPEQAIVSGWPADLGPFAGLSLSWAGRDSMSGAILLDSKLGVQARPGMTARFVAGRAPRLSSAP
Ga0193723_100017721	F018903	N/A	MKSILWLVPLCILLACGSGKSSQTVNRDTLTERQKDSILANSKIPNARAVGRAMNAADSMSARIRSSDTVARDTTER

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