NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193723_1036356

Scaffold Ga0193723_1036356


Overview

Basic Information
Taxon OID3300019879 Open in IMG/M
Scaffold IDGa0193723_1036356 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1472
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.987Long. (o)-107.0038Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008875Metagenome / Metatranscriptome326Y
F014185Metagenome / Metatranscriptome265Y
F072702Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0193723_10363561F072702N/ACRRRHLNTHYNGKRGKGDAFDRATGNVKAADVLLDWRVERIVLLGKNVARCFGFRDLPFLAEMSIYGRLFLIFPHPSGTNRWWNERRNERRAQQLLQRFLRGETVLGRDRR
Ga0193723_10363562F014185N/AMSDLSRRGARRRGNSKNDAITGGMIVGMTVYPWEDRCSKLVGINIVKISEADYRDYPDLCMKIVVEALLSLPSGSYTVVNHTEPVPCVMDIRLADKGCGLRLKAFDRETINSIKQPACLRVVVG
Ga0193723_10363563F008875GAGGMHNEREENSITRSRETERLNGELEIDYQRNTVMFHPNALRELTFSLPLTPSDVDVVRSLAQITRKLETHSFHNYRGGNQAAACDD
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