NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193712_1002048

Scaffold Ga0193712_1002048


Overview

Basic Information
Taxon OID3300019880 Open in IMG/M
Scaffold IDGa0193712_1002048 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4146
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9827Long. (o)-107.0102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027238Metagenome195Y
F087807Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0193712_10020483F087807AGGAGMQFVFGILLMAQLSLPPGASLPQIMTANFKPAALVTAGQKTDIVVSFTVVKGFVIDRQPQTPVTLKLTEVPGVKLAKAEIVASTVDPKSKDEYYVDLPVIHVNATASKAGKYELPGKLTYFFCNKSDGFCSKQTVDVKIPLQVQ
Ga0193712_10020485F027238N/AMVIGETVSENQVREFSLIYASDVLPDLAREPGFESGRFLVEDGGNMAVALTLWKTRDDCLRYHSSRSYRQFVSKTQHLLVGDFVVKLFKEAV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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