Scaffold Ga0193707_1000007

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193707_1000007

Scaffold Ga0193707_1000007

Overview

Basic Information
Taxon OID	3300019881 Open in IMG/M
Scaffold ID	Ga0193707_1000007 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	50252
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9514	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021329	Metagenome / Metatranscriptome	219	Y
F056974	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193707_10000071	F021329	AGGAGG	MAEVVSKFKGKQVEVEILTDTYKIRGTLFVPLAGKDGYSARLSDFLNSPEKAFLALTNVNVEALPDPDMKWDAPFLAVNKSVVTMVR
Ga0193707_100000753	F056974	N/A	MLSLMIVSSCVNRITMHSLDGERLDGRWRPAREDSGLIQVVGSAGETLVGTFKPVPRGIFFEGYQKTFGTGTIDAAGPDASEFGNAFAGMLGTSSILADVAYGENYNTGSGKAAHVVTGPLFYWMASLRGDKRTTMQCFLIGSSYTGHGLGRCKGAEGKEYTLEF

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