NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193707_1005851

Scaffold Ga0193707_1005851


Overview

Basic Information
Taxon OID3300019881 Open in IMG/M
Scaffold IDGa0193707_1005851 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4287
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9514Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045826Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0193707_10058511F045826AGGVKRYGHIVTCCAIFAIAISGGLSADTTQNSYQLPSDAQVIGYLLQSVTWYRHLYTERQVASDPGDLVFLNDNQALESQIVKLSFEFAKADAALAKTATSPHDAPARLAAPASADLAHFIELKNRNDQLTQQTSEDIGKLNEKIASARKDDKKLKAALEDTQSRLELLQAVSQAVNDLVQFVQTARTAQANTATLDLTIDDLAQSIPELSSPATPLSKLPAQDSDSRTSNSWRETGILGLASEVSALNRKLRVVDEKIRLTDNFSLSVKNMRTPMSDFITRVLQRAVTSNLQTSNLSLLSEQKSRLDALTVELKAFSPAILALDKQKALLEEYESHLLPWRTAVAKQYRQAWKKLVVRLLIVVLIVGLLFGTGEISRRLALGRIQDPNRQRVISMVHRLLTM
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