NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193713_1048627

Scaffold Ga0193713_1048627


Overview

Basic Information
Taxon OID3300019882 Open in IMG/M
Scaffold IDGa0193713_1048627 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9827Long. (o)-107.0102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031010Metagenome / Metatranscriptome183Y
F101637Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0193713_10486271F031010AGGAGMWKKQDDAMGAQPDFASTERPDLASLGDALVESLVNDQFKKENFAVVPQKALADVHHEPSWSSTMTTYIGAVNEFTKHATAFIEQLPLLTKARDAYEQAMKASAELRKVLDAGEENLRTLMTQLEQGVGIQRVNLAPDKKNPEPAKVERMRGTDQGEGRARRWP
Ga0193713_10486272F101637AGGAMKKQVIHTILLAGLLCAPAFAQRVEIFGGAQFEHLQSSYNAVGWNGSVTGNFKHVLGITGDFSGVYKSRVTDSSVYTYTVGPVLTARLPVVQ
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