Scaffold Ga0193725

Basic Information
Taxon OID	3300019883 Open in IMG/M
Scaffold ID	Ga0193725_1000005 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019883 Open in IMG/M

Scaffold ID

Ga0193725_1000005 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	91882
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (65.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

91882

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (65.82%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9866	Long. (^o)	-107.0007	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9866

Long. (^o)

-107.0007

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062637	Metagenome / Metatranscriptome	130	N
F082446	Metagenome / Metatranscriptome	113	N
F083968	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193725_100000552	F062637	AGGGGG	MKRTILLLTPLLFSAGCSVTSPTDPKEGVGPVVARYSLTAEDGNPPPCCASDSDGVHITVVGGALTFHGPAGYRDTVFTPAGPASGACVHEVPNGAFVNSRTYTVTLTDSTRYLLLPCDRGAYDLIVIRRLDHEGGSSTTDSIVVSSGTFSAKPDTIGLADSRNPVSFRASVTAPTVLVTGPTHQYRFDPGN
Ga0193725_100000553	F082446	GGAG	MVVWSLAWRAKHSGVPPWRTVATTVIAAVVWFLLSGALPELGMEPKITIGDRGTRPGGGFTHSISNAFQRGQLETLQARAQQFGPSGAFAEFSCRDSVPDFRFEMTLEPAGEYNERLIDVGYTPRLDVGGADRCLSFGLSYLFDTTLAEIDHGPPVDYGYVNPRTGEKLGPYIRGPLRKPICRCDLRHSGREWVAWSQQAAEALR
Ga0193725_100000556	F083968	N/A	MRARGALTALLLLAGADRAAAQLCAGNSNFSLSHFHSAVDVDIDKLAHRYTAEFMYRYRHFFGGLEYGVKSWELTSLDGTSRAFGVTVGLTAQHPKSKFDLCPFFSYRSLAGPQEIGGTTWRFDEKSYSAGVSMGYLAARSKLWDFTPTATLTFATGHPKMTTAAGGNMATYQDFCCGSQSFTLLRLGVGLGFSDDLTLIPAVSWPLGDVGHTTYAVVVAFRLGKGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193725_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences