NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1000081

Scaffold Ga0193747_1000081


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1000081 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55119
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000232Metagenome / Metatranscriptome1513Y
F000440Metagenome / Metatranscriptome1137Y
F001138Metagenome / Metatranscriptome767Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_10000812F000232GAGLGNEDRCSEENGVLPLFVHDLKAGMRSERQRNDRIEKTCQPSAMKHPKQNKRAPQTHPSALAVPSYHRILVKHGLIEKTLSIPDAYEAFLKVGADPEVQKLRRKAARGNKMKHVPALYLVTAMALQGMTKQELQALKLRIEEKRV
Ga0193747_10000817F000217AGGAGMKSRILAFSSHGDTTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDMATGERLEKVTREQNEVLMVHPIAGG
Ga0193747_10000818F001138N/AMLAVVNFRPGGTCMSPANLSVIALLALIEWRFVFAGLRCRPWVRAIAPQQQRHNNLLEEDLRISDPRGVAVIAGNRLENNSDGLDSLDRKDRAKRYLRRIVALTGATKTDDAYVLDVGQMRFHVRDRYVRRLRDLTDPGCAYEETCFYPVHISMPKAEEIATALLQLTNNPALFDKWAVQNGLAFKADGQLFTCAH
Ga0193747_10000819F000440GAGMHAGPVRHEVPEALAALTGAKQVCGESYRLTAGRMHFLVDSKFVRVIAPRSESTCFSVAADPDMPSAEVVASALLQLKNNARLFEKWREWPAHTFKANGKMFRDIYQLTRDET
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