NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1002319

Scaffold Ga0193747_1002319


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1002319 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4873
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002821Metagenome / Metatranscriptome528Y
F020047Metagenome226Y
F031718Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_10023191F020047AGTAGGVSAFWRRLSGDSTSAAVLLALALFASPLAAQKTSLSVTGGTVAFPAPTAADYIAGYIDASTGATFTINSLNGVPRTTTISIRSTSASLGTGKVIGDLQWRRSDLATWNSITLTDAQVEQRIVINKGLNDPWSNTIFFRMLLSWTSDAPATYSANYQITLSQTVP
Ga0193747_10023194F031718N/AMIDEASLPDGWTASGAAGGDLSVSLSTSAVVELIVAPRSGISAVAVDLSKAHVIARDSAGREWAALMTGPTTATFQSLPVGTYTLQFDLSELSEPLVPRAPVPVLVVSGKDSKSITVTLDPRPIRMWNGSSAKSGSQK
Ga0193747_10023195F002821GAGMKSSFRAGVAALVIATSSLALACLQSTEPQPSQLGLIGSWNYTGVQSGPVRETLTGTLTISRESGTSFQGQLVLEAVNSQTGEQRVFNGPVSGSESGVDVIDFDANVESAPRRHVGTIVQDTISGTWIGSSSGGTMTSGTFRAERETR
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