NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193727_1001406

Scaffold Ga0193727_1001406


Overview

Basic Information
Taxon OID3300019886 Open in IMG/M
Scaffold IDGa0193727_1001406 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9932
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007987Metagenome / Metatranscriptome341Y
F023404Metagenome210N
F047601Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0193727_10014065F047601N/AMTNAQLKKLVNEAVTLHREIVARTERLKIMKADLVREARLHENDFMPTNNGGSRWTATGTDGCIARVNFPAPALLSHIDTEDEAFDKILALAGESLDALFDSVHYLKPIADFRDEVAAALPRRAATQLIELCQVECSPRVSFETAETKTKER
Ga0193727_10014066F007987GGAGMAKQTSNNAIAEAERDCSFSATTIAALLFLAAKFPHRQFNSNELCVLSGVGRTAMSQIKNAADSPFSLGKCTLQRLDGWLAKHPGFKQQ
Ga0193727_10014067F023404GGAGGMPKGVRKSITIPGLLAATVKRRCREFRHTIFTPYAVELVCYDLRSDAKHSITLEIARDTQPAQDAVDRELVARYRPGQPRKGLLVQMVDRIHRLQSVAAASRHDLPLPPLSAVAERVTFPFEIWRLVEVRWKELGYRSLSAYITGLIRYDLLVSRPHSSITADCRSKLQRKLTRKTLADRRKGRRRKILLDHLIEEAEGRPIPERELERVKTRIARELRRLSIYGRNRGISCVSNYFSTANR
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