NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193727_1002103

Scaffold Ga0193727_1002103


Overview

Basic Information
Taxon OID3300019886 Open in IMG/M
Scaffold IDGa0193727_1002103 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8371
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F059437Metagenome / Metatranscriptome134Y
F065202Metagenome / Metatranscriptome128Y
F082044Metagenome / Metatranscriptome113Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0193727_10021031F065202N/AAKLMRAVAHGFKPTGGGPPVAVAKEFMHADMKKSAHKTKEGRADRKRDMNAWAEGK
Ga0193727_100210312F082044GAGMSVTLKLVHEEGIRLRQQAAHKIDHTKETSIEKIDSLTGEKTIEKKVEFSHTSVDWRFVKRPASDGKIVEECQQDEDARRVDSNGRKMQLGTYTVHVTAGMNNLVIERKGKVTPFSFKNNAIRNQVRVQHQRLIDSGRQTKDKKPVHEWKNDGAAKYIPPNTFDGVFVGDGQRAILDEMP
Ga0193727_10021035F059437N/AMVIGNRYLQGSPVLPYAQVKAYPNTDLFMDLQFVDHTNTPVIPTSISIEIDDITNSVVMAGPTTLNPAGAVGGVPFSYQAFSATMTLQVVATAWQMTFPYIGSQLCQVGMQFTAIDSATGQPFTSTAVIAVIELCALATVSGLAF
Ga0193727_10021037F048424N/AMMLTEELEAVAKQTRVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLWFEDGPETGAIIPMQVKPGDVVEFSFRNIALVDFDRVGFPGIGDLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGAEDWHRA
Ga0193727_10021038F102028AGGAMSEGYGNLGKTSETIPGAPKHPWGKWPKIKPESVAPLRDDKPDLYNYQPTRFVSRDEARARGWKHFWTGELCVTGHRAARYVANGSMCVDCIRVEKGQLPVYGKGVPELEAARRRNYTQKNTAAATGPAPPSAAERSFLTKYAELKDFAIAADACGRSEAEFLAILSWNTTFRDAVNRLEESIGAARTQQVTVEFDWTEEKKQAFLITYANTADVKQALRSVGATNVQFHKELSCNGDFQRGFDDANNIARMVFDHAASAAATKGDARMLGRIAANFFPEKFGENLKMDLKVTQNLSLEQAHDQITHLLSRFDRQGLLPAPDFADDSVEEAEYQLVEPTRVEQIGQDPERQSEDAGSDPNSDLVSGSE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.