NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193729_1002723

Scaffold Ga0193729_1002723


Overview

Basic Information
Taxon OID3300019887 Open in IMG/M
Scaffold IDGa0193729_1002723 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8752
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F000673Metagenome / Metatranscriptome944Y
F002076Metagenome / Metatranscriptome596Y

Sequences

Protein IDFamilyRBSSequence
Ga0193729_10027232F000673AGGMARKVISRNFRYPSADLREKVRAAVKERGFRSEQAFLITACSNELRRGENTEAVTQFEARVAATLTNLVQQVQGLHTLAQAQVALTDVLLKYIITCVVEPPDDALPAARVRARLRYDKLIRAAAKEISNKNRDTLKAMVDDE
Ga0193729_10027234F002076AGAAGGMQKDYRPCLETLAGAPPKRKAALIRSLLPGIEAALHSGQSLKDIWEALGNEGLQMTYHVFHMTVWRARKTRKPTATSSWGKQDKPSESQGLQEAKVETVEGRDPFANLRRLEEDRPGFRWRGTRSLETLVRGTEGTNDKNKR
Ga0193729_10027236F000321AGTAGGVPKRRSVHFGVYNVRLLSTLDKLLRDKPRYMGELSTSINDALLGVNLNTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVAKKRNCSMNQLVNSALLAYYSKAGESKLKRPTKGRGPSMHSYDTMSELERRELHQMLAELSAMQSVPLEAEEPNGTYYEYDRNLKATVKVTPDGERTPVEKLEKSFEPTRRKGPRSIAHEEITT
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