NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193729_1003138

Scaffold Ga0193729_1003138


Overview

Basic Information
Taxon OID3300019887 Open in IMG/M
Scaffold IDGa0193729_1003138 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8174
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000925Metagenome / Metatranscriptome832Y
F025796Metagenome200Y
F089341Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0193729_100313810F000925AGAAGVRANGLMSSSSPEQRNYGEIERLENLLQDLRANPSTARETEAIREIGLEIALAVREVGAMLVNVGWEQSYVADRDSKPS
Ga0193729_100313814F089341GGAMEAQLKTLRQGAESQRERADTQQERIDVAAKELGEVSDRLQAAARALRQSI
Ga0193729_10031385F025796AGGAGMKVRRAVASTVGGLMVLLAGITLGTAAAAPIKWVSVPLGTHQFGQMRAPDAIVANAGPNQVGFKKEGSGCGCMDGPQGPMLFDVAPNGSIWLFDVLNHRLLMWQTGKAMRPARSLPLPKLDVRDFALGRNGTIYLNAVYAKPPAGDSGANIWALKPSGHVLWRAHADTGNALRLGPDGSLYSIGARKAGAGSSSLWPEACTWSRHSSACTRCISPSSTDRTRSFAPGA
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