Basic Information | |
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Taxon OID | 3300019888 Open in IMG/M |
Scaffold ID | Ga0193751_1000155 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 62410 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (60.34%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.8924 | Long. (o) | -106.9111 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000840 | Metagenome / Metatranscriptome | 866 | Y |
F001878 | Metagenome / Metatranscriptome | 623 | Y |
F005307 | Metagenome / Metatranscriptome | 405 | Y |
F018212 | Metagenome / Metatranscriptome | 236 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193751_100015520 | F018212 | N/A | MLAPAFGPLAMARAAQPGAMHCMRQSISGHPAQHAMQCHHAMAQSKPPQPESSPVESSSSESSEASFQAVANCCLNHDCCCRVATLEWAHPAFRPLSFLSLLIEPAPASQSAVLLSSDISGHDSARAPPRS |
Ga0193751_100015545 | F001878 | AGGAG | MSAPSRRPEIRRRRTRAEKIAKLRKRLAVASASNEKDLLTAKLHRVGLVSPGNPLVKSA |
Ga0193751_100015552 | F005307 | GGA | MDKGKAVRAALKAGVLGVFIGMIPLLGMVLTGALAVFFYRRENRVSPPTALGSRLGGAAGVVSFAINALMITIRIFIFHAQQEYIDAILKIAQKFGANAADPDIQASIHHLFTPSGLVITFFFGMIFTVVLASVGGALASLLNRPRNTRG |
Ga0193751_10001558 | F000840 | N/A | MITLEERIAKTERLLRRLEEDQPYLHVRLSALGAEHRESANAFADRVRAEAEAELQRLLAERALPYEWNVPQPAD |
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