NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1000765

Scaffold Ga0193751_1000765


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1000765 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22871
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027913Metagenome193Y
F057547Metagenome / Metatranscriptome136Y
F105555Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_100076519F105555AGGAGGMKTNAESMQEEHLPQSNNPSRKKPYEAPKITILKLDRAKAQLVARALAGDRDAEDLLESR
Ga0193751_10007656F057547GGAVACSFIALAAWVRQLPFWLLNSRVVTECLQSRQLNLAKPFIILMV
Ga0193751_10007657F027913GAGGMNYSESRNHFEKARINTAEAVTIEMLDGLKHLSHAIEEDVRTLEQHIRNIQKSADSRKVC

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