NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1004285

Scaffold Ga0193751_1004285


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1004285 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8163
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008141Metagenome / Metatranscriptome338Y
F008368Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_10042858F008141AGGMAIGPAVRLVRQVQIALLVSIALCAVAGEMLAGKLAHDPANALFHALSFISISLVGATVVVRRTLVLPSEASLKERSDDTVAVTRWRTGYLFLYALCDLLGVFGLVLRMAGFTLANVWGFYLGGFLLLLLYSPRAPHAEFG
Ga0193751_10042859F008368N/AMNKAESDRIHELCSLIAVEQDRHKFLQLCEELNRILAVKRERLQNDKISDEMSD

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