NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1008037

Scaffold Ga0193751_1008037


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1008037 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5695
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007987Metagenome / Metatranscriptome341Y
F023404Metagenome210N
F047601Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0193751_10080371F047601GAGVFARLLEQVRQSERGKKPQPTLFMTETQLKKLVNEAVSLHRALTTYSERLKALKADLIREAQRHKEDFTLTDGGGSRWTACGTDGCIARVNFPAPALLSHIDTEDEAFDKILALAGESLDGLFDSVHYLKPIADFRDEVAAALPRRAATQLIEICQVECSPRVSFETAETKTKER
Ga0193751_10080372F007987AGGAGMKANPAKQVNQMENDSFSSTTTIAALLFLAAKFPHRQFNSAELCILSGIGRTAMSQIKNSPDTPFSLGKCTLQRLDAWLAKRPGFKQQ
Ga0193751_10080373F023404GGAMSAWFGRNEGSIMARGVRKSITIPGLLAPTVKLRCAEFGHTIFTPYAVELVCYDLRSDANHTITLEIARDTQAAQDAVDRELVAHYRPGQPRKGLLVQLVERVGHLQSVAARNRHDLIFAPLSAVPERVTFPIDIWRLANPRWQKLGYRSLSAYITALIRYDLLVGGPHASTTADCRSKLQRKLTRKTLADRRKGRRRKILLDHLIEKREGRPVAQEELERVKANIAQELRRISLAR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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