Scaffold Ga0193751_1008877

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193751_1008877

Scaffold Ga0193751_1008877

Overview

Basic Information
Taxon OID	3300019888 Open in IMG/M
Scaffold ID	Ga0193751_1008877 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5381
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050509	Metagenome / Metatranscriptome	145	Y
F050928	Metagenome / Metatranscriptome	144	Y
F074609	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_10088773	F050928	GGAG	MARPFAEMVRVRNVSDHGAILIGVRSKVKTGEVLDVQHGTARAQFRIVWISLSGEAGIQALAFERPILGIGLPKVFEMVGTG
Ga0193751_10088775	F074609	GAG	MSDEIDMLCEECGQTFSAFLHEMADQNEKVVCPNCRASRDCSSPKAAEPLTGTRSVKRIS
Ga0193751_10088776	F050509	GGTGG	MSVGTNMSDDKLDVLCEDCGQAFSDFLHEMADQNAKVATCPKCGKIHEFPSKAAKPGVPSLKKVI

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