Scaffold Ga0193751_1009114

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193751_1009114

Scaffold Ga0193751_1009114

Overview

Basic Information
Taxon OID	3300019888 Open in IMG/M
Scaffold ID	Ga0193751_1009114 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5302
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F013723	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100911410	F013723	N/A	LFIIAGPVGAGKTTFYEAYLKEPFPTLVPALRHQQQPFLDERRSFAVEDIRVDTQLLEQAKAAGYSTKVLFIST
Ga0193751_10091149	F000321	AGTAGG	VPKRRSANFGVYNVRLLSSLDKLLRDKPRFMGELSTSINDALLAVDLNTVELVTLQSRQKQTGRETQVVILNRLRKRIHDVAKKRNCSMNQLVNSALLVFYSRGGESKLKKPAKGRGSSVHSYDTMTEAERRELHQMLAELSAMQSVPFEAEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLETGFEPARGKAPRKIAREEITT

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