NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1025078

Scaffold Ga0193751_1025078


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1025078 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2877
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003900Metagenome / Metatranscriptome463Y
F062503Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_10250782F003900N/ALPDKKVLLIDRCHATREARRAVLRSRGVEVHEAEEIPAARFLWQPDVYDLVMLDVRRYSPAEALEFYEQIRAADPRQQFAFLMGSPRYLSLTWPTEVIATEKGPQQWAETVRHFATAA
Ga0193751_10250783F062503GGAMKDPYQVLSQKEMDIERVRREIEALRFVVPLLAEDADWIERGQASPPSDSQFRGTGTAGVKG

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