NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193728_1013871

Scaffold Ga0193728_1013871


Overview

Basic Information
Taxon OID3300019890 Open in IMG/M
Scaffold IDGa0193728_1013871 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4045
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012046Metagenome284Y
F015514Metagenome254Y
F017541Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0193728_10138712F015514AGGAGMHRNIARAYDCLQDEHDRVDAACVKILAQNDRHLERELLLADLDSPRHHDEMLLYEERLSRPQRRRVLDLNRYGRKIEHIMDVLLRL
Ga0193728_10138713F012046AGGAGMKKAKATNPAPRRFVPGRQYRGVHGKVVDWVEHRFEEGLLYIHVRFVDKTELCWRIATRMTIEEGDLSDWKSGDFEQLRVFVRNQRDRSV
Ga0193728_10138714F017541GGAGGMKLHLFQQITELNHSFDELISSLAKLESIPFFQRELIRHARSGVEIARVYVNREFFDNFEKVVEDDAKWAYRFQRDFDKRLKDRDDLYLEVRDSEQRRKRKGLPPRVVMLPDCDWSDEDRYDEKLSQRRKKSALKRHRPARTTAKESRSGVRRSPSTPRKGELRP
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