NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193728_1048397

Scaffold Ga0193728_1048397


Overview

Basic Information
Taxon OID3300019890 Open in IMG/M
Scaffold IDGa0193728_1048397 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2071
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001851Metagenome / Metatranscriptome626Y
F005764Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0193728_10483971F005764N/AMHHGLLVLPDGLFCATDRNEGSFMEPVLYSLQAALRGALILTLSLSVFAQIPAATDASGVRSDRKAHTPPLTVLPSAPDPYPPFEFRGIRIGDGTKGAERKFLALKVASLSSKPGLCGSDGISRIETCTDVLDTGEYVNMTMLDHRVAQIYVSTDRRTRGNTYSSYVLALGTKYGRPDKLETKYYRNGIQTGSSGEHVRWLNGDQYMEGSEIERAITIGSKALDAEIAEQEHVYERN
Ga0193728_10483972F001851AGGAGMSAISIAVGLLIALFAILPLYRKRKPKPQIAVYGSQRMCPSCGLITSRLKACCLECGKSLTVVRQW
Ga0193728_10483973F000042AGCAGMKNTKFIVKVDRGGSQATEYVQRIDRTPIRTTSNPKLALVMGRFTAEDAVKSIQNSRCTSWLESVQVSV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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