NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194022_1000046

Scaffold Ga0194022_1000046


Overview

Basic Information
Taxon OID3300019937 Open in IMG/M
Scaffold IDGa0194022_1000046 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16023
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (94.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034389Metagenome175Y
F082616Metagenome113N
F103173Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0194022_100004619F082616AGGAGLIGYIACPECNGTGYIERERVAPWIDRDTPPDLEAYDEVCELCQGDGEIETNKHEEDDES
Ga0194022_100004620F103173GAGGMKAEKRQETRVSKAIAEAWEGSTTAKQAAEKYVVMLKEDQALRDEATENWLERIAYKDVAMHPVNYRHAFKSSVQKLKVLQKGETSTPSVALTGVVSIYAQDMFERFRLPNTGVPLGDATREDLENAIAHEGSRSTHHAQQKVFYEKMQKRLSGNAQIVREVWTTEEAERAYQEALA
Ga0194022_10000465F034389AGGAMNIYTEAMNIAKEAMENAEGCFDTAQDCIHQMCDGHEISIYYHKAIQFCADHDTSDGEAWLEDCGGISQEGDSFGTIACRIAFATLYVAAQDALCELQDEIEDAA
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