NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194022_1011368

Scaffold Ga0194022_1011368


Overview

Basic Information
Taxon OID3300019937 Open in IMG/M
Scaffold IDGa0194022_1011368 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1161
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071189Metagenome122Y
F090336Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0194022_10113682F071189GGAMGSINCNECGNLFTFDVLPRRGAICFKCHVGTVRLGFSQGKEEFHGPTITERQRQQEKQAADAGIKAERVGERWV
Ga0194022_10113683F090336GGAGMYWWVPILVAVIGGPLMWGLSKFDRRNTQQHAENQKVLLRIEGKVDHIDERLDDHIDYHLKEGL

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