NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194022_1025381

Scaffold Ga0194022_1025381


Overview

Basic Information
Taxon OID3300019937 Open in IMG/M
Scaffold IDGa0194022_1025381 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)780
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003506Metagenome / Metatranscriptome482Y
F006222Metagenome / Metatranscriptome378Y

Sequences

Protein IDFamilyRBSSequence
Ga0194022_10253811F006222AGGMPRVATTINISNPKRYGYDVRIDEILLRSAVGPGREMQIQSSDVQEGQINVKQNPEDFTSNLGRIYSRNNFTGGQGLDTAHRANGSPKDTTRFFD
Ga0194022_10253812F003506N/AADTTTTLFSPVQVEIVQLPNPFTYTDDTGTERTITYTSGPNQVMALQFYNINQGHTAYVTFKKKFVEPTAETDTLTTVGLEDEYEPIIMAGVAAQMMSGRDIPTATADYISDQMSIQNFPTGSAASIRNSLLRYQQVLLNQARKYLKAKYPDAVVINGVNSGIQ
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