NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194032_1000067

Scaffold Ga0194032_1000067


Overview

Basic Information
Taxon OID3300019938 Open in IMG/M
Scaffold IDGa0194032_1000067 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11252
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022786Metagenome / Metatranscriptome213Y
F044813Metagenome154Y
F096247Metagenome105Y
F102110Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0194032_100006711F102110GGAGGMTDARVQRMLDRLRLQVEACELNPMLGNKKVLEDAHNMIYDLRNRLRHRKPYDWDREGGR
Ga0194032_100006712F044813N/AMAEQKAELLNFKIELNRDGNVEFNLDCVDTIGLERTLRNLGDPVYPHKIGNIVRHYFRTLQDKIKEERT
Ga0194032_10000673F022786GGAGMSDLIVDEEKIAALEQAGLLKGRYYIVLEPLEDENEDEDGFAIRAYATRDTQVEIDGEKTFDPTYVILQGLLGAVHENFDDLYDMGLERVTLEALGEVVPEEELKPEHRERIKSMEGNVITAKFGELQ
Ga0194032_10000677F096247AGGAVETSNSLKCNICSCEFDIELEGGVQGYLGIIPFSLCPMCFSGIMDMFEQLSGDVEYDNESGQEMEDDDEDSHG
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