Basic Information | |
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Taxon OID | 3300019938 Open in IMG/M |
Scaffold ID | Ga0194032_1000067 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11252 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware | |||||||
Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1638 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F022786 | Metagenome / Metatranscriptome | 213 | Y |
F044813 | Metagenome | 154 | Y |
F096247 | Metagenome | 105 | Y |
F102110 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194032_100006711 | F102110 | GGAGG | MTDARVQRMLDRLRLQVEACELNPMLGNKKVLEDAHNMIYDLRNRLRHRKPYDWDREGGR |
Ga0194032_100006712 | F044813 | N/A | MAEQKAELLNFKIELNRDGNVEFNLDCVDTIGLERTLRNLGDPVYPHKIGNIVRHYFRTLQDKIKEERT |
Ga0194032_10000673 | F022786 | GGAG | MSDLIVDEEKIAALEQAGLLKGRYYIVLEPLEDENEDEDGFAIRAYATRDTQVEIDGEKTFDPTYVILQGLLGAVHENFDDLYDMGLERVTLEALGEVVPEEELKPEHRERIKSMEGNVITAKFGELQ |
Ga0194032_10000677 | F096247 | AGGA | VETSNSLKCNICSCEFDIELEGGVQGYLGIIPFSLCPMCFSGIMDMFEQLSGDVEYDNESGQEMEDDDEDSHG |
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