Basic Information | |
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Taxon OID | 3300019938 Open in IMG/M |
Scaffold ID | Ga0194032_1022034 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 673 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware | |||||||
Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1638 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011403 | Metagenome / Metatranscriptome | 291 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194032_10220342 | F011403 | AGGAG | MAIINVSAGSEAVLFLGDSSANANIAGTDGLSVPRMSDITLNNSTGVFRFKTLDNTAESAVTTPATNQITLNVVVDDAAFFGTGAAVDTVVGTGLFGCSKNKTRVFFNAGFQGTDSGSKFLSGSGFISGLAPTVNMDSPVWVTPVTIEVDGDFANSSIA |
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