NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193730_1000071

Scaffold Ga0193730_1000071


Overview

Basic Information
Taxon OID3300020002 Open in IMG/M
Scaffold IDGa0193730_1000071 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36596
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.954Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002175Metagenome / Metatranscriptome587Y
F087347Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0193730_100007115F087347N/AMDFLLAFNNEAALVGDMNGKVRTERRPTQLTPQAWENRLRFAYIEAERGSEDEGGMPFMNATGSFRFENGQVKVMKVEGVKPYQPYSDDASGLSVRAAFLEHLNQWTVVE
Ga0193730_10000719F002175AGGAGMAILTSMPGEGDKVSIYDVPDSVLSQYALAGDKAAQMFPESGKTSGAEIPKSGGGANAVKVENAESLGEVQAYSAVCVCRELLCNAYGCWWHYYYCYC
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Biomedical Sciences Research Center "Alexander Fleming"
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