NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193755_1000029

Scaffold Ga0193755_1000029


Overview

Basic Information
Taxon OID3300020004 Open in IMG/M
Scaffold IDGa0193755_1000029 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37527
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (73.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9763Long. (o)-107.0041Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F001221Metagenome / Metatranscriptome743Y
F001794Metagenome / Metatranscriptome633Y
F018690Metagenome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0193755_100002925F001794GGAGMKAVTFPCSGSAAEARARLEAAIDGRPWNAAGLDGWIRGDRVVVYYRDAAKYRALFRPTFIGRFRERDGKTALDGRFRMTLFARALLPIWLAPGIVCLVVALAPTQLQPQSPGFRIAFALLGGLLALMAFGRFALEWWGRPGDVDAVSQGIRAAVQS
Ga0193755_100002928F001221GGGGGMGGEPFLKTLTRTTVVAGALGIVFLLAFPRHASLVSDFVDVFTVAFCFTFLAPYVDRLLLALPGIRTGVGPVVRVVGWFAGGLWCAVIARWLWMNLGRDLRELPGLIWGGVLLVALELVARRRDADSPQ
Ga0193755_100002930F000195AGGMDLTVTRAQYDAVRGARHLPDVLKKVLEGARPSGGGDGYVLDLTYEEATALNELCSWNVHTNASGAVTAESKLFDDLVKAILTHPDY
Ga0193755_100002938F018690GGTGGVTSLQFLWVVAVAQGVLLVALIILIILNRWFRLRRSARLQPRRRELEAVMQRWAMGQAPAAEVERALARLPVSLAVDALVTWSARVPGERWQDLSRLLAHQWWARVLRTNYRSARWWKRLECARFLSVAATPHDIGRVLR
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