NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193755_1000305

Scaffold Ga0193755_1000305


Overview

Basic Information
Taxon OID3300020004 Open in IMG/M
Scaffold IDGa0193755_1000305 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13848
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9763Long. (o)-107.0041Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F005023Metagenome / Metatranscriptome414Y

Sequences

Protein IDFamilyRBSSequence
Ga0193755_10003058F002331AGGMKRAMLTLGLAAVVATPTAAQWLGEPVWNSPKGGTGVTISGDYAKPNSDYGKGNTWGGRASLGIGTITLTAGVASWKPDLAAESFTSIGGNAAFRLIGGSLLPFSVNLQVGAARTDSANSRPAQNAVTGAVGFSVPLPTPGISIEPYFSPGVRYHSSGGTNSTEFGYVFGANLSFGLVGVHLAYDNERLKTGGSRRVFGVGAHLDLHLPLGM
Ga0193755_10003059F005023GAGMKHSVLTLGLTAFLATNAAAQWLGEPAWNDPQAGTGFTIYGDYSRPNSNAGGGTAFGGRVTLGAGVFTLTGGVSSWDPDLSSERLLSIGGTAAFRLLGGSRIPVAVNLQLGGGHSLEITSATTTLPVQTTLLAAVGLSVPLPTPIVRVEPYVSPGIRYHHYSNVAAGAADHETHFGWVVGGNIGLGPIGIHLAYDSEKFDDGTRHGVYGLGASLGLRP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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