NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193735_1000356

Scaffold Ga0193735_1000356


Overview

Basic Information
Taxon OID3300020006 Open in IMG/M
Scaffold IDGa0193735_1000356 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14367
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9228Long. (o)-106.9541Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016712Metagenome245Y
F062729Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0193735_100035614F062729AGGAGGMSRLTPVLFGAQLLIMGANAMAAQVSAYDENALRVESRQGNLQILRGIEGTVVARAGIFHPPKVANLVIQSDSALAEAKIFERDYEPGQWVAALGIATLGAAIGASRISDINPVIQVSLYAISFAALGYGGNRLHSAYGALSKAIWWYNRDLKR
Ga0193735_100035615F016712N/ATCGGGGGGSTTPTVPPGLYLEFSRILDLKEPWTRGDPEIEVHIQGPRDATSPTSGIDLSCSGEHANQYAKVFNQDNGFWEGRVLLFSRDETNAFIAKFSQGFHVLFWEDDNDPCVLKLDSNTLVGVLTSTATAVSTVAIKVLPGATPNIIAAVFLGSFFASAGDWLLTNDDFVGAAVDQATAGYYYPGNTHVIMDGTTLNGRATIVYRP
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