Scaffold Ga0193735_1000381

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193735_1000381

Scaffold Ga0193735_1000381

Overview

Basic Information
Taxon OID	3300020006 Open in IMG/M
Scaffold ID	Ga0193735_1000381 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13956
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9228	Long. (^o)	-106.9541	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059462	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193735_100038117	F059462	GAG	MQRKLVLIFSIVALLISGCAQTQPNHTIPGTELKKITQLDLKTNQPIKSWNAQANTIQQHFAPPVGITFKDADSGKTVHFDGTYRIESYQTSPNASVNIKK

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