NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193735_1128552

Scaffold Ga0193735_1128552


Overview

Basic Information
Taxon OID3300020006 Open in IMG/M
Scaffold IDGa0193735_1128552 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)681
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9228Long. (o)-106.9541Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008790Metagenome / Metatranscriptome328Y
F018651Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0193735_11285521F018651GAGMRDAEIANAIVPVVRQHRLTQAATEEALRELAIPRAANIARICVSLGL
Ga0193735_11285522F008790GAGGMITPILRSKDAIASWLIDVAGNVAISISDLALLKRIQSLIIPAFVSTEEAMLWGSDLNPEQRATLLDMQRSVSNAARAEADPQRMVNLSTQSQLMREAGEAAPFDGHR

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