NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193757_1020675

Scaffold Ga0193757_1020675


Overview

Basic Information
Taxon OID3300020008 Open in IMG/M
Scaffold IDGa0193757_1020675 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)657
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9765Long. (o)-107.0043Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012035Metagenome / Metatranscriptome284N
F055861Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0193757_10206751F012035N/AVVAEQVSTAPSAARGSNFAGARTLADDRPMLPRWRYTTALAVGLVALFMSPGGRDAEDVAQLERLVPKIERAQTLSPEARETINRLIARQTIARGWDDPSQQMRRKAAIERVTSAMQAKESIPAVSDVASR
Ga0193757_10206752F055861AGGAGMRTIMAFGFAALLSLLAIGAWSSATTHSVNRAEASAASGWPINPLELMRNSKDLAHQQYD

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.