NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193749_1014343

Scaffold Ga0193749_1014343


Overview

Basic Information
Taxon OID3300020010 Open in IMG/M
Scaffold IDGa0193749_1014343 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1549
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8926Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000569Metagenome / Metatranscriptome1018Y
F049978Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0193749_10143432F000569GAGMDLHIKKVWLPGAASCLLFFGFYWVLIWLPFDKTRLQFLTIPYLVLPLVGAHAAYWARRMKGSVLERIVAALFPVFAFAALFAVRTVYGLFFEGKPYTLPHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLREQLP
Ga0193749_10143433F049978N/ALDRFQGPFFRRGEGRVDEGFTQIDLAAVPEVLGEALQQPIEAAPALPELEATMASLVRRIARWQVVPRRARAQDPQDAVHDGPRIGPRPAAPIQATARAEGRFEHGPLDVGEVHAVEYDGDPTDVSVDAARLSGQLFSEVRAAERPCAKHQQ
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