NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193738_1000058

Scaffold Ga0193738_1000058


Overview

Basic Information
Taxon OID3300020020 Open in IMG/M
Scaffold IDGa0193738_1000058 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72108
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (11.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8827Long. (o)-106.9107Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002819Metagenome / Metatranscriptome528Y
F049710Metagenome146Y
F051999Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0193738_100005847F051999N/AMKTITFIFVAIFFASLVSAQDTEFPRSKKTDSRYWLLGLGLSIQNMYDEGISYVRYKGTGIAPSIGLIKSTEKKYCQFLFQPTFNKLTTERSNELRPMAVRTTRFVLDYQYLVRVKEWDKKLKLFAGGNASLLFNLKTAEQLDNSQLVYDYALSIGPAAKLDKTVKWNKRECVAAIGLSLPLLSHIARPYYLNRIEFIDPENDFLGDLFNNSSVVTINKNLRITSGLSFTYPLFNKNELKLGYTWDFYKMTTINSVYAAEHLISISFLSNY
Ga0193738_100005851F002819N/AMPTTTCEISGAEYQLDYTKLSSKRGTYYFGKIHSEPVTGFAFTALTSGGHEFDDSREPMHRQEAIVNAIKKSESQ
Ga0193738_100005855F049710N/AMRKRKMPHFIRLTRLALKSVWYALTIPNDPYHEKEVNFWNIPKRKKVSERQYR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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