NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193738_1001025

Scaffold Ga0193738_1001025


Overview

Basic Information
Taxon OID3300020020 Open in IMG/M
Scaffold IDGa0193738_1001025 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11908
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8827Long. (o)-106.9107Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027031Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0193738_100102512F027031GGCGGMTQRWRTLVLLYPVLDARYGSGLQRSRVQRVMTREERGVVMDVVERLPATVETWSDGLASLEPLDVVEVRRSIRSLSSSGGGRWWVGPREVRPELEAIAETGATYDSVYALWPCDPAVPQCGWGCSLGPSEATFYAGYSSISTDHWRTLLTDPDPEQGYVHEWLHQVEAVYRTLGVGEAELPPLHDAGDFTSSRPLDEAPFGRTFAEYHDGGARTWAPWYRDWMTGRLAPAGTGGPDGARVLQLADAPIGLTPDRWDLRTRARRSAAAD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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