Basic Information | |
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Taxon OID | 3300020021 Open in IMG/M |
Scaffold ID | Ga0193726_1000026 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 411624 |
Total Scaffold Genes | 413 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 319 (77.24%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Associated Families | 10 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002123 | Metagenome / Metatranscriptome | 591 | Y |
F015497 | Metagenome / Metatranscriptome | 254 | Y |
F022039 | Metagenome / Metatranscriptome | 216 | Y |
F022483 | Metagenome / Metatranscriptome | 214 | Y |
F026988 | Metagenome / Metatranscriptome | 196 | N |
F033526 | Metagenome / Metatranscriptome | 177 | Y |
F033555 | Metagenome / Metatranscriptome | 177 | N |
F044086 | Metagenome / Metatranscriptome | 155 | Y |
F044088 | Metagenome / Metatranscriptome | 155 | Y |
F092494 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193726_1000026125 | F033526 | GGAGG | MKKYITIGVAALAFGVAFASVPASAQTHYGKALNDGGMVDDYNSSATPAKPLYNSATPAAPATPHYGKALNDGGITDEPSAAQKAAAAKAQTKTVQQQTAPHYGKPLNDGGF |
Ga0193726_1000026152 | F026988 | N/A | MYRRALRKKSRSESIRQTLGVVAVGAVLGTGLFAIADYFTEQHWVRPAPVARNAGEIYTGSVLYMPQEGRNCRQMLFDNNTGRFTDKGAVDCENAAYRGVDGSLSKQWSSSRTRVIADGFRQH |
Ga0193726_1000026178 | F022039 | GGAGG | MKDGVADIAKIDESLMTYDLADEVLEAAARVDGVRAITVGYCATASTSWYCLPS |
Ga0193726_1000026214 | F022483 | AGGAGG | MDQPVKKTDLDFDYDSYGLERRLDSEQAPDAAGYWFLAAVLFAFIAAGVIVYRAGNTEMQTAANYSSHPAAQSDPVASPPIVPR |
Ga0193726_1000026237 | F033555 | AGGA | MNDAAIGFDQIEELAAYEVSDEALEAAAGSEKAAYTLAYCSGLSVCPA |
Ga0193726_1000026253 | F044086 | GAGG | MNDTMDHLGQTDEDVFVPKYSDEDLEAAVGGNPQAFPTFTCSQPMCATGGGCGTWPGN |
Ga0193726_1000026290 | F015497 | GGAG | MRWGAYLAAALTMASVEAANAQTVADTIADFGLIGTWAADCTQPASSSNFLTVYAIKPSGAVSRTYYDQPDHVYNNYKITSAKRQAPDMLSYQQVWDFEGSPANIAGDRVQVLLNMADNKFQIVSSQASDGSFFVKDRKYPGSNDESPWQLRCPGK |
Ga0193726_1000026330 | F092494 | GGA | MNFHAVIAGLDPAIHGAATLALLWHVSMDHRVKPGGDEIRNALRKKEQTMPARRRTKSRDHPHTPKRLTPEQESAQRKAAFAAIRALFCQVTQPWHSCQRGYCRRHHCCIGEAGPGACLGRHWPLMTPAQQKTAHIEVIDGGSQRQQPQTHTEWSLRRFPPSNFVHG |
Ga0193726_1000026407 | F002123 | N/A | MADAEKEEPVMLPFADKEGPGWHVVVRYHEGHERRIDGFATEQEAVDWIMANAKEVDK |
Ga0193726_1000026408 | F044088 | GGA | MSPGEAAASYRLYAVYCADIAQTVTDSARKVALLDMAQAWARLAEVVDKDRPSDEASAAT |
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